PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.2570s0201.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family GeBP
Protein Properties Length: 452aa    MW: 49405.9 Da    PI: 4.6435
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.2570s0201.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573120.58.4e-38135233298
               DUF573   2 lfqrlwseeDeivlLqGlidf.kaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkif 89 
                          lfqrlw++eDei lL+G++d+ ++++g+s++  d+  fye++k++++++++k+qlveK+rrLKkK+++ ++k++sgke+ f+++hdq++f
  Bostr.2570s0201.1.p 135 LFQRLWTDEDEIELLRGFLDYmTTHRGSSSHPpDTAPFYEQIKSKLQLDFNKNQLVEKLRRLKKKYRNVMSKISSGKEVFFKSPHDQSTF 224
                          79*******************888999999999********************************************************* PP

               DUF573  90 elskkiWgs 98 
                          e+s+kiW++
  Bostr.2570s0201.1.p 225 EISRKIWNQ 233
                          *******85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045042.8E-34136232IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MTSDHRDAVF SLESPDLEEG GVGDGGESDT DEDLRENDDV IMPETNEADP EDDDPEEEDL  60
NSPSTSSLAM VSTISTTAVV SGTPTTTSST GAVTVALPAG SAVPVSVIPV DSDPKWHRMT  120
EIVHQRPPID DSRRLFQRLW TDEDEIELLR GFLDYMTTHR GSSSHPPDTA PFYEQIKSKL  180
QLDFNKNQLV EKLRRLKKKY RNVMSKISSG KEVFFKSPHD QSTFEISRKI WNQTGKIIGF  240
EDNNVMDFEE TNNHHNTNGN YSTFNSPSSN PTLELDSENG VEKKLTMSSS SGSRKRSRSR  300
IGKIEEDNKP IIIPSDGQIP NAASNVNLNE TAAAVGIGGN LGGLIEETVK NCVSPVIKEM  360
MNGTTSMMMA AMGGGFPGSG GAAHGFGSLS PMFTRPLNFG FGVGGGNKAV ADERWRKQQI  420
LELEVYSRRL ELVQEQIRTT LNELKTMPSG V*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1294299KRSRSR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0701360.0AY070136.1 Arabidopsis thaliana AT3g04930/T9J14_12 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006297660.10.0hypothetical protein CARUB_v10013683mg
TrEMBLR0I2K60.0R0I2K6_9BRAS; Uncharacterized protein
STRINGfgenesh2_kg.3__469__AT3G04930.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30982764
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.10.0DNA-binding storekeeper protein-related transcriptional regulator